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Original Article

Expression of the Gene for Multidrug-Resistance–Associated Protein and Outcome in Patients with Neuroblastoma

Murray D. Norris, Ph.D., Sharon B. Bordow, B.Sc., Glenn M. Marshall, M.B., B.S., Paul S. Haber, M.B., B.S., M.D., Susan L. Cohn, M.D., and Michelle Haber, Ph.D.

N Engl J Med 1996; 334:231-238January 25, 1996

Abstract

Background

Overexpression of the gene for the multidrug-resistance–associated protein (MRP) has been linked with resistance to chemotherapeutic agents (multidrug resistance) in vitro. The expression of MRP by neuroblastoma cells correlates with N-myc oncogene amplification, a well-established prognostic indicator in patients with neuroblastoma.

Methods

To relate MRP gene expression to established prognostic markers and the clinical outcome of neuroblastoma, we analyzed MRP expression in specimens of primary tumors from 60 patients with neuroblastoma.

Results

Levels of MRP gene expression were significantly higher in tumors with N-myc amplification than in tumors without such amplification (P<0.001). High levels of MRP expression were strongly associated with reductions in both survival and event-free survival (P<0.001) in the overall study population and in subgroups of patients without N-myc amplification and patients with localized disease. For the overall study population, the five-year cumulative survival rates in the groups with high and low levels of MRP expression were 57 percent (95 percent confidence interval, 37 to 78 percent) and 94 percent (95 percent confidence interval, 86 to 100 percent), respectively. In contrast, expression of the MDR1 multidrug-resistance gene was not predictive of survival or event-free survival. After adjustment by multivariate analysis for the effects of N-myc amplification and other prognostic indicators, high levels of MRP expression retained significant prognostic value for poor survival (relative hazard, 14.9; P = 0.01) and poor event-free survival (relative hazard, 9.7; P = 0.004), whereas N-myc amplification had no prognostic value.

Conclusions

High levels of MRP gene expression in patients with neuroblastoma correlate strongly with poor outcome. The findings suggest that expression of this multidrug-resistance gene accounts for the association between N-myc amplification and reduced survival.

Media in This Article

Figure 1Cumulative Survival of 60 Patients with Neuroblastoma.
Figure 2Expression of the MRP and MDR1 Genes and Cumulative Survival in 60 Patients with Neuroblastoma.
Article

Neuroblastoma is the most common solid tumor of early childhood.1 Patients with localized disease have a favorable prognosis, but the majority of children with neuroblastoma present with metastases and have poor prognoses despite intensive multimodal therapy.2 Treatment failure in these patients is largely attributable to resistance to a diverse range of structurally and functionally unrelated cytotoxic drugs. Resistance to multiple chemotherapeutic agents (multidrug resistance) is particularly apparent in patients whose tumors show amplification of the N-myc oncogene, one of the most powerful indicators of poor outcome in neuroblastoma.3 The mechanisms by which such amplification influences the phenotype of neuroblastoma are unclear.

Multidrug resistance has been intensively investigated in the laboratory. Among the underlying mechanisms, the best-known involves the MDR1 gene, which encodes P-glycoprotein.4 Although a number of studies have suggested a role for MDR1 in the chemoresistance associated with certain cancers,4 the contribution of this gene to the multidrug-resistant phenotype of neuroblastoma is controversial.5-10 Recently, another gene, the gene for multidrug-resistance–associated protein (MRP), has also been found to confer a multidrug-resistant phenotype in vitro.11-13 The MRP gene, located on chromosome 16p13.1,14 encodes a 190-kd membrane-bound glycoprotein that, like P-glycoprotein, mediates resistance to a range of drugs made from natural products, including the vinca alkaloids, anthracyclines, and epipodophyllotoxins.12,15 We recently reported increased MRP expression in neuroblastomas with amplification of the N-myc oncogene and decreased MRP expression after the differentiation of neuroblastoma cells in vitro.16 In the present study, we examined the relation between MRP expression and clinical outcome in patients with neuroblastoma. We found a significant association between high levels of MRP expression and poor outcome and showed that this relation is independent of N-myc amplification.

Methods

Patients and Tumor Specimens

Samples of 60 primary neuroblastoma tumors from untreated patients were obtained from either the Neuroblastoma Tumor Bank of the Pediatric Oncology Group or the Prince of Wales Children's Hospital in Sydney, Australia. The samples from the United States were sent to the investigators for analysis after the proposed study had been reviewed and approved by the Neuroblastoma Biology Subcommittee of the Pediatric Oncology Group. Because insufficient information was available for all patients to be classified uniformly according to the staging criteria of the International Neuroblastoma Staging System,17 the Pediatric Oncology Group tumors were classified according to the staging system used by that group, which was based on the results of resection of the neuroblastoma,18 and the tumors from the hospital were classified according to the system of Evans et al., which was based on the anatomical site of the tumor.19 Among the 28 Pediatric Oncology Group tumors, there were 3 in stage A, 4 in stage B, 12 in stage C, 7 in stage D, and 2 in stage DS; the 32 tumors from the hospital comprised 8 in stage I (including 5 ganglioneuroblastomas), 5 in stage II, 8 in stage III, 9 in stage IV, and 2 in stage IVS. The clinical stages of the tumors were then classified as favorable (Evans stages I, II, and IVS and Pediatric Oncology Group stages A, B, and DS) or unfavorable (Evans stages III and IV and Pediatric Oncology Group stages C and D). Before the study, the number of copies of the N-myc oncogene per haploid genome were determined independently in each tumor by Southern blot analysis, with quantitation of the extent of amplification by serial dilution of DNA.20,21 A tumor with more than 3 copies of N-myc was considered to have N-myc amplification; 13 of the tumors studied (7 in stages III or C and 6 in stages IV or D) had N-myc amplification, with from 8 to 200 copies. Data on histologic classification according to the system of Shimada et al.22 were available for less than half the tumors; therefore, this factor was not analyzed.

All the patients received their diagnoses from December 1984 through September 1994 and were treated in a manner specific to their tumor stage. In the group from the hospital, patients in stages I, II, and IVS were treated with surgical resection of the primary tumor alone or with surgery and six months of chemotherapy with vincristine and cyclophosphamide; patients in stages III and IV received three months of chemotherapy (with teniposide, doxorubicin, cisplatin, vincristine, and cyclophosphamide),23 delayed resection of the primary tumor, and radiation therapy at the primary site. Patients in stage III whose tumors had N-myc amplification and patients in stage IV subsequently received supralethal chemoradiotherapy and autologous bone marrow transplantation, as described elsewhere,24 whereas all other patients in stage III completed 12 months of chemotherapy with the same agents that were used preoperatively.

Among the patients from the Pediatric Oncology Group, those in stage A were treated with surgery alone. Before 1987, all infants under one year of age who had unresectable tumors (those in stages B, C, and D) and all children one year of age or older with stage B disease were treated with five cycles of cyclophosphamide and doxorubicin. Infants in stage DS were also treated in this way or observed without treatment. Among infants with disease diagnosed after 1987 and unresectable tumors, those with hyperdiploid tumors were treated with cyclophosphamide and doxorubicin, whereas those with diploid tumors received cisplatin and teniposide. Older children with stage C disease received cyclophosphamide–doxorubicin alone or combined with cisplatin–teniposide, and in some cases also with radiation. Children with stage D disease were treated with the same pairs of drugs, given in alternation or together in pulses.25-30

Overall, eight patients underwent autologous bone marrow transplantation as part of their therapy. The responses of all the patients were assessed according to internationally accepted criteria,17 and outcomes were determined as of June 1995. The median period of follow-up for the surviving patients was 33 months (range, 7 to 120), whereas the median time from diagnosis to death among the patients with treatment failure was 9 months (range, 2 to 23). The outcome measures studied were survival, defined as the time from diagnosis to death, and event-free survival, defined as the time from diagnosis to the first major event (relapse, failure to enter remission, or death). Among the patients who survived and those who survived without events, survival and event-free survival, respectively, were defined as the time from diagnosis to the last follow-up and were treated as censored observations. Although the Australian and American institutions differed in their treatment protocols, there was no significant difference between the two groups of patients in overall survival or event-free survival. Moreover, multivariate analysis indicated that the inclusion of the treatment center as a variable had no prognostic value.

Analysis of Gene Expression by the Polymerase Chain Reaction

The competitive assay of RNA by the polymerase chain reaction (RNA PCR assay) that we used is a well-established method of analyzing gene expression in a range of tumor tissues, including neuroblastoma.16,31-34 The total amount of RNA in cytoplasm was isolated from frozen tumor tissue,35 and complementary DNA (cDNA) was synthesized from 1-μg aliquots of RNA with random hexanucleotide primers and Moloney murine leukemia virus reverse transcriptase.31 Aliquots of cDNA corresponding to 50 ng of RNA were amplified for 30 cycles in a final volume of 25 μl with 1 unit of Taq polymerase. After an initial period of denaturation for 3 minutes at 94°C, the cycling conditions consisted of 45 seconds at 94°C, 45 seconds at 55°C, and 90 seconds at 72°C. Each target gene sequence (MRP, MDR1, or TRK) was amplified with a control gene sequence (β2-microglobulin) with gene-specific oligonucleotide primers, as described elsewhere.16,31,33 After electrophoresis of the PCR products on 12 percent polyacrylamide gel and staining with ethidium bromide, the bands were visualized and photographed under ultraviolet transillumination. Densitometric analysis was performed with photographic negatives,16,33,36 and the ratio between the expression of the target gene and that of the control gene was determined for each sample by dividing the densitometrically determined volume of the target electrophoretic band by that of the control band. The level of expression of a given gene in an individual tumor (the PCR ratio) was defined as the average of the ratios for that gene obtained in competitive RNA PCR analyses performed on at least three occasions. All the PCR analyses were performed with the investigators unaware of the patients' survival status and outcome.

Statistical Analysis

Differences between groups of tumor specimens in the PCR ratios for specific target genes were assessed by two-sided Student's t-tests. In the survival analyses, the PCR ratios for specific genes in each tumor were categorized as low or high, according to the following procedures. For the TRK gene, tumor specimens were classified as having low expression if a TRK-specific PCR product was either absent or barely detectable (PCR ratio, <0.1) and as having high expression if the PCR ratio was >0.1 (range among the specimens studied that had high expression, 0.13 to 1.68). For the MRP and MDR1 genes, there was no clear demarcation between tumors with low expression and those with high expression; therefore, we used a different method of classification. Gene expression in an individual tumor was considered high if the PCR ratio for the gene in question exceeded the mean ratio for all 60 specimens. The decision to dichotomize the values obtained for MRP and MDR1 expression around the mean PCR ratios was made a priori, not after examination of the results of the survival analysis.

The survival analysis was performed according to the method of Kaplan and Meier, and outcome was compared between subgroups by two-tailed log-rank tests for univariate comparisons. Associations between the patients' clinical characteristics and the molecular characteristics of the tumor specimens were examined by Fisher's exact test. A Cox proportional-hazards regression model was used in the multivariate analysis. Statistical analyses were performed with StatView 4.1 (Abacus Concepts, Berkeley, Calif.) or SAS software (version 6.08, SAS Institute, Cary, N.C.). Results are expressed as means ±SE, and probabilities of survival and relative hazards are given with 95 percent confidence intervals.

Results

Clinical and Molecular Characteristics

To determine whether the 60 patients whose tumors we studied were representative of patients with neuroblastoma in general, we analyzed survival in relation to four well-established prognostic signs (Figure 1AFigure 1Cumulative Survival of 60 Patients with Neuroblastoma., Figure 1B, Figure 1C, Figure 1D, and Table 1Table 1Relation of Age and Tumor Stage at Diagnosis to the Molecular Characteristics of the Tumors in the 60 Study Patients with Neuroblastoma.). The results were consistent with previous studies.20,37,38 Amplification of the N-myc oncogene was seen in 22 percent of patients, all of whom had advanced-stage disease at diagnosis, and N-myc amplification was associated with significantly reduced survival (P = 0.002) (Figure 1A). High levels of expression of the TRK proto-oncogene, which encodes a receptor for nerve growth factor, were present in 80 percent of patients and were strongly associated with improved survival (P = 0.007) (Figure 1B), as reported elsewhere.37 TRK gene expression in tumors with amplification of the N-myc oncogene was significantly lower (median PCR ratio, 0.0) than in tumors without N-myc amplification (median ratio, 0.681; P = 0.001). Infants, 90 percent of whom (26 of 29 patients) expressed high levels of the TRK gene, had significantly better survival than older children (P = 0.02) (Figure 1C). Tumor stage was a powerful prognostic indicator (P<0.001) (Figure 1D), with no deaths among patients with favorable tumor stages. The proportion of patients with unfavorable tumor stages (60 percent) was similar to that in other large series of patients with neuroblastoma.20,38,39 However, in this study there was a smaller proportion (27 percent) of patients with stage IV or D tumors than would have been expected with consecutive enrollment,20,38,39 because of the frequent diagnosis of stage IV or D disease by analysis of bone marrow and urinary catecholamines, without biopsy of the primary tumor. When we studied event-free survival, N-myc amplification, TRK expression, and tumor stage continued to have significant prognostic value (data not shown). The characteristics of our study population with respect to well-established prognostic indicators and outcome were thus representative of patients with neuroblastoma in general.

Expression of MRP and MDR1

We detected expression of the MRP gene in all 60 tumors obtained at diagnosis (mean [±SE] PCR ratio, 0.403±0.034). As in our earlier study,16 levels of MRP expression in samples of neuroblastoma with N-myc amplification (mean PCR ratio, 0.628±0.074) were significantly higher than those in tumors without amplification (mean ratio, 0.340±0.034; P<0.001). There was an intermediate level of MRP expression (PCR ratio, 0.534±0.022) in the human neuroblastoma cell line, SK-N-SH, which we used for reference. MRP was expressed at significantly higher levels in tumors with unfavorable clinical stages (mean PCR ratio, 0.483±0.047) than in tumors with favorable stages (mean ratio, 0.282±0.040; P = 0.004), a finding that supported a trend noted earlier.16 No significant differences in levels of MRP expression were found between tumors from children younger than one year at diagnosis and tumors from older children, or between tumors with high levels of TRK expression and those with low levels. The MDR1 gene was expressed in 56 of the tumors (93 percent; mean PCR ratio, 0.199±0.026). In contrast to MRP, MDR1 was expressed at lower levels in tumors with N-myc amplification (mean PCR ratio, 0.115±0.033) than in tumors without such amplification (mean ratio, 0.222±0.031), although the difference was not statistically significant (P = 0.09).

Gene Expression and Outcome

Figure 2AFigure 2Expression of the MRP and MDR1 Genes and Cumulative Survival in 60 Patients with Neuroblastoma. and Figure 2B shows cumulative survival according to levels of expression of the MRP and MDR1 genes. High levels of MRP expression were strongly associated with reduced survival (Figure 2A). For the overall study population, the five-year cumulative survival rates in the groups with high and low levels of MRP expression were 57 percent (95 percent confidence interval, 37 to 78 percent) and 94 percent (95 percent confidence interval, 86 to 100 percent), respectively. Event-free survival was also associated with expression of the MRP gene; the five-year rates of event-free survival in the groups with high and low levels of MRP expression were 46 percent (95 percent confidence interval, 25 to 66 percent) and 91 percent (95 percent confidence interval, 82 to 100 percent), respectively. In contrast, there was no difference in either survival (Figure 2B) or event-free survival with respect to the level of expression of MDR1.

To determine whether the prognostic value of MRP expression was independent of the influence of the N-myc oncogene and other established prognostic indicators, we performed multivariate analyses. When outcome was adjusted for the effect of N-myc amplification, high levels of MRP expression remained a significant indicator of both poor survival (relative hazard, 5.7; 95 percent confidence interval, 1.1 to 30.8) and poor event-free survival (relative hazard, 6.2; 95 percent confidence interval, 1.6 to 24.5) (Table 2Table 2Multivariate Cox Regression Analysis of Prognostic Factors in Neuroblastoma.). One important result in the multivariate analysis was that N-myc amplification had no prognostic value, a sign that MRP expression accounted for the prognostic value of N-myc amplification. In three separate analyses, the relation between MRP expression and outcome was adjusted for the effects of age, TRK expression, and tumor stage. In each case, high levels of MRP expression remained a significant independent predictor of poor survival and poor event-free survival, with hazard ratios ranging from 4.9 to 9.1. When the four established prognostic indicators — namely, N-myc amplification, age at diagnosis, TRK expression, and tumor stage — were combined with MRP gene expression as variables in the Cox regression model, high levels of MRP expression remained the most powerful indicator of poor survival (relative hazard, 14.9; 95 percent confidence interval, 1.8 to 126.5) and poor event-free survival (relative hazard, 9.7; 95 percent confidence interval, 2.0 to 46.0), independently of all other prognostic indicators (Table 2). With the exception of age, no other variable in this study had significant predictive power in determining outcome, although the upper limits of the confidence intervals for the relative-hazard estimates were too high for us to rule out substantial independent contributions by the other prognostic factors.

Additional analyses supported the strength of the association between MRP expression and outcome. When the MRP values were dichotomized post hoc around the median PCR ratio for the 60 tumors (0.34) rather than the mean ratio, MRP expression remained significantly predictive of both survival (relative hazard, 5.9; 95 percent confidence interval, 1.3 to 27.1) and event-free survival (relative hazard, 5.2; 95 percent confidence interval, 1.5 to 18.4). When the tumors were divided into quartiles according to ascending levels of MRP expression, the cumulative rates of event-free survival for the quartiles were 93, 87, 72, and 38 percent, indicating a correlation between increasing levels of MRP expression and the increasing risk of a poor outcome. This correlation was also found with the Cox proportional-hazards regression model, which showed that the risk of an adverse event increased in proportion to increasing levels of MRP expression; there was a relative hazard of 8.4 (95 percent confidence interval, 1.8 to 38.0) associated with each unit increase in the PCR ratio for this gene.

We also analyzed MRP gene expression in subgroups of patients who were expected on the basis of previously established criteria to have good outcomes. Among patients without N-myc amplification, high levels of MRP expression were associated with significantly reduced rates of event-free survival (relative hazard, 8.9; 95 percent confidence interval, 1.8 to 44.1) (Figure 3AFigure 3Relation between MRP Gene Expression and Outcome in Patients without N-myc Amplification and Those with Localized Disease.). Among patients with localized neuroblastoma (Evans stages I, II, and III and Pediatric Oncology Group stages A, B, and C), high levels of MRP expression were again associated with significantly reduced event-free survival (relative hazard, 6.1; 95 percent confidence interval, 1.6 to 23.1) (Figure 3B). These effects were similar in the analysis of overall survival in the two subgroups (relative hazard for patients without N-myc amplification, 10.6; 95 percent confidence interval, 1.2 to 95.1; for patients with localized disease, 5.2; 95 percent confidence interval, 1.0 to 26.9).

Discussion

We found that expression of the multidrug-resistance gene MRP at high levels in primary neuroblastoma tumors predicts reduced event-free survival and shorter overall survival in children with this neoplasm. The association between high levels of MRP expression and poor outcome was evident both in the overall population of patients and in clinically relevant subgroups. Among the prognostic indicators analyzed, MRP gene expression was the most closely associated with outcome. The effect of overexpression of MRP appeared to be independent of tumor stage, TRK expression, and amplification of the N-myc gene. MRP expression thus differs from other molecular indicators of outcome in patients with neuroblastoma, such as TRK expression and deletions of chromosome 1p, which have no prognostic value after adjustment in multivariate analysis for the effect of N-myc amplification.37,38 This linkage of prognosis to the MRP gene has implications for our understanding of the biology of neuroblastoma and for improving the treatment of patients with this condition.

Amplification of the N-myc oncogene is also a predictor of poor outcome in such patients,3,40 but the molecular basis of the association is unknown. The N-myc oncoprotein appears to act as a transcriptional regulator and has been thought perhaps to govern the transcription of critical genes conferring multidrug resistance.41 Our multivariate analysis, which revealed that N-myc amplification had no prognostic value when MRP expression was included as a prognostic factor, raises the possibility that the N-myc protein regulates expression of the MRP gene. This effect could modulate the response of neuroblastoma cells to cytotoxic drugs. We previously demonstrated a significant correlation between the expression of the N-myc oncogene and that of the MRP gene in neuroblastomas and showed that these genes undergo coordinate down-regulation in neuroblastoma cell lines after treatment with retinoic acid.16 The promoter sequence of the MRP gene42 contains three E-box motifs,43 which are the consensus DNA-binding sequences of the myc family of oncoproteins. However, we do not know whether N-myc uses these motifs to influence MRP gene expression.

Although both the MRP and the MDR1 genes encode membrane glycoproteins that can function as transporters of multiple drugs, the prognostic value of the two genes differed in this study. Evidence about the contribution of MDR1 to clinical multidrug resistance in patients with neuroblastoma is contradictory.5-10 Moreover, several chemotherapeutic agents used to treat neuroblastoma, such as cisplatin and cyclophosphamide, are not substrates for P-glycoprotein.4 The difference we found in prognostic value between the MRP and MDR1 genes may be explained by the putative physiologic role of MRP as an efflux pump for glutathione S-conjugates.44-46 MRP has not been shown to mediate resistance to cisplatin or cyclophosphamide, but these drugs do undergo glutathione conjugation.47,48 It is possible that in their conjugated forms, these drugs could be exported from cells by MRP.

A prerequisite for future assessment of the expression of MRP is a reproducible standard against which tumor specimens can be compared. The level of MRP expression in the SK-N-SH cell line we used fell just below the cutoff value for the uppermost quartile of the PCR ratios for MRP. This value (0.56) discriminated patients with good outcome from those with poor outcome. Future studies may define the relation between intermediate levels of MRP expression and clinical outcome, but in evaluating the high MRP values that are associated with a poor prognosis, the SK-N-SH cell line may be a useful standard.

A clinical implication of our findings is that compounds capable of inhibiting the action of MRP 49-51 may prove therapeutically useful. Our results in a relatively small number of patients with advanced disease need to be confirmed in large prospective studies before any modification of current treatment protocols is considered. It would be feasible to conduct such studies with snap-frozen tumor tissue obtained at diagnosis.

It is plausible that MRP influences the outcome in patients with neuroblastoma by directly affecting the response of the tumor to chemotherapy. In a case of aggressive neuroblastoma in which tumor specimens were available both at diagnosis and after treatment, we found that MRP expression increased after treatment with cytotoxic drugs (unpublished data). It is also possible that MRP influences the aggressiveness of neuroblastoma, its metastatic potential, or both. But regardless of how MRP overexpression relates mechanistically to poor outcome, our results suggest that the evaluation of this gene can help in assessing the prognosis of patients with neuroblastoma. Further studies of MRP could add to our understanding of the pathogenesis of resistance to chemotherapy in this malignant disease.

Supported by grants (to Dr. Norris, Dr. M. Haber, and Dr. Marshall) from the National Health and Medical Research Council (Australia) and the New South Wales State Cancer Council (Australia), by a grant from the Leo and Jenny Leukaemia and Cancer Foundation of Australia (to Dr. Marshall), and by the Children's Leukaemia and Cancer Foundation (Australia). Ms. Bordow is the recipient of an Australian Postgraduate Research Award.

We are indebted to the Neuroblastoma Biology Subcommittee of the Pediatric Oncology Group for reviewing and approving this research project and providing samples of neuroblastoma tumors; to Drs. Vivienne Tobias, Ian Kern, and Bruce Currie for assistance in obtaining the tumors from Prince of Wales Children's Hospital; and to Professor Wayne Hall and Mr. Neil Donnelly, of the National Drug and Alcohol Research Centre, Prince of Wales Hospital, Sydney, Australia, for helpful discussions and assistance with the statistical analysis.

Source Information

From the Children's Leukaemia and Cancer Research Centre, University of New South Wales and Prince of Wales Children's Hospital, Sydney, Australia (M.D.N., S.B.B., G.M.M., M.H.); the Department of Gastroenterology, Prince of Wales Hospital, Sydney, Australia (P.S.H.); and the Department of Pediatrics, Northwestern University Medical School and Children's Memorial Hospital, Chicago (S.L.C.).

Address reprint requests to Dr. Michelle Haber at the Children's Leukaemia and Cancer Research Centre, Prince of Wales Children's Hospital, High St., Randwick, NSW 2031, Australia.

References

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