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Original Article

Diagnostic Relevance of Clonal Cytogenetic Aberrations in Malignant Soft-Tissue Tumors

Jonathan A. Fletcher, M.D., Harry P. Kozakewich, M.D., Fredric A. Hoffer, M.D., Janice M. Lage, M.D., Noel Weidner, M.D., Robert Tepper, M.D., Geraldine S. Pinkus, M.D., Cynthia C. Morton, Ph.D., and Joseph M. Corson, M.D.

N Engl J Med 1991; 324:436-443February 14, 1991

Abstract
Abstract

Background.

Malignant soft-tissue tumors often present substantial diagnostic challenges. Chromosome aberrations that might be diagnostic have been identified in some types of soft-tissue tumors, but the overall frequency and diagnostic relevance of these aberrations have not been established.

Methods.

We attempted to determine the karyotypes of a series of 62 consecutive, unselected malignant spindle-cell or small round-cell soft-tissue tumors (from 46 adults and 16 children) after direct harvesting of cells or short-term culture. All tumors were examined independently by immunohistochemical staining in addition to routine light-microscopical evaluation, and all but two tumors were examined by electron microscopy.

Results.

Metaphases were obtained from 61 of the 62 tumors, and clonal chromosome aberrations were identified in 55 (89 percent). In the six tumors that yielded metaphases but lacked apparent clonal aberrations, the normal metaphases were found to originate from non-neoplastic stromal elements within the tumor specimens. Thus, all tumors in which karyotyping was successful contained clonal chromosome aberrations. Forty of 62 tumors (65 percent) contained clonal chromosome aberrations that either suggested or confirmed a specific diagnosis; in 15 of these tumors (24 percent of all tumors), the aberrations were important in establishing the final diagnosis. Cytogenetic analyses were particularly informative about small round-cell tumors from children: 8 of 14 round-cell tumors contained diagnostically important chromosome aberrations. Using the combined approaches of light and electron microscopy, immunohistochemistry, and cytogenetics, we established an unambiguous diagnosis for 60 of 62 tumors.

Conclusions.

Cytogenetic analyses reveal clonal chromosome aberrations in virtually all malignant soft-tissue tumors. These clonal chromosome aberrations, particularly in small round-cell tumors in children, often have diagnostic relevance. (N Engl J Med 1991; 324:436–43.)

Media in This Article

Figure 1Undifferentiated Small Round-Cell Neoplasm (A) Arising in the Pharynx of a Seven-Month-Old Boy (Patient 5) and the Translocation (11;22) Supporting a Diagnosis of Peripheral Primitive Neuroectodermal Tumor (B).
Figure 2Undifferentiated Round-Cell Neoplasm (A) Arising from the Pelvis in a 21 -Year-Old Man (Patient 54) and the Translocation (1;11;22) Supporting a Diagnosis of Atypical Ewing's Sarcoma (B).
Article

SOFT-TISSUE tumors often present diagnostic challenges to the clinician and pathologist. In particular, despite the use of contemporary histologic, immunohistochemical, and electron-microscopical techniques, it can be difficult to determine the histogenesis of many small round-cell and spindle-cell soft-tissue neoplasms.1 2 3 4 In several recent studies, disparity between the original histologic assessment and a subsequent expert review was noted in over 25 percent of cases of malignant soft-tissue tumor.2 3 4 These pervasive diagnostic uncertainties have undoubtedly contributed to the absence of consensus regarding either the prognosis or the role of adjuvant chemotherapy for specific types of soft-tissue tumor. Accordingly, it is notable that consistent, apparently diagnostic chromosome rearrangements have been described recently in several varieties of malignant soft-tissue tumors.5 These rearrangements include the translocation (X;18)(p11.2;q11.2) in synovial sarcoma,6 the translocation (11;22)(q24;q11.2–12) in Ewing's sarcoma and peripheral primitive neuroectodermal tumor,7 , 8 the translocation (2;13)(q35–37;q14) in alveolar rhabdomyosarcoma,9 , 10 the translocation ( 12; 16) (q 13–14; p11 ) in myxoid liposarcoma,11 the deletion of the short arm of chromosome 1 in poor-prognosis neuroblastoma,12 and deletions involving chromosomes 1p, 3p, or 22 (or all three chromosomes) in many cases of malignant pleural mesothelioma.13 In other soft-tissue tumors, the absence of specific chromosome rearrangements or the characteristic complexity of karyotypic aberrations can be useful in confirming a diagnosis. One example is the category of malignant peripheral-nerve—sheath tumors, which historically have been difficult to distinguish from other spindle-cell sarcomas, including monophasic synovial sarcomas. Unlike synovial sarcomas, malignant peripheral-nerve—sheath tumors lack the translocation (X;18) and invariably contain complex cytogenetic aberrations.14 , 15

Although recognition of characteristic chromosome rearrangements has allowed the diagnosis of some soft-tissue tumors that have had nonspecific features on immunohistochemical examination and electron microscopy,16 the frequency and overall diagnostic relevance of such cytogenetic aberrations remain to be defined. Because the karyotypes of most soft-tissue tumors are determined in short-term cultures of fresh tumor specimens, overgrowth by non-neoplastic stromal elements can obscure cytogenetic aberrations in the tumor. Nevertheless, in previous studies, clonal cytogenetic aberrations were identified in 1 of 7 leiomyosarcomas,17 17 of 25 malignant fibrous histiocytomas,18 and 11 of a heterogeneous group of 29 soft-tissue sarcomas.19 To assess the frequency and diagnostic relevance of cytogenetic aberrations in soft-tissue tumors, we developed an approach that enabled us to analyze tumor metaphases after direct cell harvesting and very short term culture (one to five days). Using this approach, we attempted to determine karyotypes in metaphases of 62 consecutive, unselected, malignant soft-tissue tumors from 46 adults and 16 children. Cytogenetically normal cultures were assessed by immunohistochemical examination and electron microscopy, in addition to routine phase microscopy, to determine whether normal metaphases derived from tumor-cell or stromal-cell populations.

Methods

The tumors in this study were consecutive malignant soft-tissue tumors received within 24 hours of percutaneous, incisional, or excisional biopsy. Percutaneous biopsies were guided by imaging, and the specimens obtained through a 16-gauge core biopsy needle. In addition to routine light microscopy, appropriate immunohistochemical techniques were used independently to study all tumors. All but two tumors (from Patients 36 and 52) were independently examined by electron microscopy.

Short-Term Cytogenetic Cultures

On receipt from the frozen-section room, all specimens were immediately minced with scalpels and then disaggregated for 2 to 20 hours in a solution containing 200 units of collagenase per milliliter (Gibco, Grand Island, N.Y.), according to the method of Limon et al.20 Disaggregated cell clusters and single cells were cultured in T25 flasks or p35 petri dishes with the use of RPMI 1640 medium (Gibco) with 16 percent fetal-calf serum (Whittaker, Walkersville, Md.), 1 percent L-glutamine, 1 percent penicillin—streptomycin, 1 percent (vol/vol) bovine pituitary extract (Collaborative Research, Waltham, Mass.), and 0.5 percent (vol/vol) Mito+ Serum (Collaborative Research) in a 5 percent carbon dioxide incubator at 37°C. Flasks coated with fibronectin (Collaborative Research) were used for culture of all small round-cell tumors, and at least three cultures were established from each specimen. Cultures were monitored daily, and the relative amounts of tumor and stromal growth were noted. Cells were harvested from each culture at staggered intervals, depending on the time of maximal tumor and stromal growth, but all cell harvesting was completed within one to five days after the establishment of the culture. Most harvesting was carried out after adherent cells had been exposed to demecolcine (Colcemid) (0.002 μg per milliliter) for 14 hours. Alternatively, cells from tumors with unusually rapid growth were harvested after exposure to ethidium bromide (10 μg per milliliter) and vinblastine (0.05 μg per milliliter) for one to two hours. The cells were then released from flasks by trypsinization, treated in a hypotonic solution of 0.075 M potassium chloride for 10 minutes, and fixed with two changes of 3:1 methanol:acetic acid. Slides were made according to conventional techniques, with steam to assist in metaphase spreading. After one day of incubation on a slide warmer at 60°C, chromosomes were banded with the Giemsa—trypsin method.21 At least 10 metaphases were analyzed per tumor.

Direct Cell Harvesting

Direct harvesting was carried out on the last 32 tumors in this series (from Patients 31 through 62) if the specimen exceeded 3 mm3 in size. In these cases, one third of the specimen was used for direct harvesting and the remaining two thirds for short-term cultures. Specimens for direct harvesting were minced finely with scalpels and were then disaggregated for 15 to 30 minutes in a solution containing 400 units of collagenase per milliliter, which included dactinomycin (0.5 μg per milliliter), ethidium bromide (10 μg per milliliter), and vinblastine (0.05 μg per milliliter). After this brief disaggregation, specimens were pipetted vigorously to break up cell clusters further; hypotonic swelling, fixation, and slide making were performed as described above for short-term cultures.

Results

Cytogenetic analysis of 62 tumors from 46 adults and 16 children was attempted during a 14-month period. A specific histopathological diagnosis was established for 60 of the 62 tumors (97 percent) with the combined use of light and electron microscopy and immunohistochemical and cytogenetic approaches. Three specimens were malignant effusions associated with pleural nodules or plaques (Patients 36, 52, and 57), whereas the remaining specimens consisted of solid tumor material obtained by biopsy or excision. Metaphases were obtained successfully by direct harvesting or from short-term cultures for 61 of the 62 tumors; the one exception was an extensively necrotic rhabdomyosarcoma (Patient 46). Clonal cytogenetic aberrations were detected in 55 tumors (89 percent),* all but 4 of which (those from Patients 5, 19, 31, and 39) had multiple cytogenetic aberrations. Forty tumors (65 percent), including 27 of those from the 46 adults (59 percent) and 13 of those from the 16 children (81 percent), had cytogenetic aberrations that supported or established a specific histopathological diagnosis (Tables 1Table 1Clinical Data and Diagnostically Relevant Cytogenetic Findings in 41 Adults with Malignant Soft-Tissue Tumors with Demonstrable Clonal Cytogenetic Aberrations. and 2Table 2Clinical Data and Diagnostically Relevant Cytogenetic Findings in 14 Children with Malignant Soft-Tissue Tumors with Demonstrable Clonal Cytogenetic Aberrations.). Frequently encountered diagnostic cytogenetic aberrations included the translocation (11;22) of Ewing's sarcoma—primitive neuroectodermal tumor (five tumors, Fig. 1Figure 1Undifferentiated Small Round-Cell Neoplasm (A) Arising in the Pharynx of a Seven-Month-Old Boy (Patient 5) and the Translocation (11;22) Supporting a Diagnosis of Peripheral Primitive Neuroectodermal Tumor (B). and 2Figure 2Undifferentiated Round-Cell Neoplasm (A) Arising from the Pelvis in a 21 -Year-Old Man (Patient 54) and the Translocation (1;11;22) Supporting a Diagnosis of Atypical Ewing's Sarcoma (B).), the translocation (X;18) of synovial sarcoma (five tumors, Fig. 3Figure 3Spindle-Cell Neoplasm (A) Arising in the Abdomen of a 52-Year-Old Woman (Patient 42) and the Translocation (X;18) Supporting a Diagnosis of Monophasic Synovial Sarcoma (B). Arrows indicate translocation breakpoints on the rearranged chromosomes.), the deletion of chromosome 1p with double minute chromosomes of poor-prognosis neuroblastoma (three tumors, Fig. 4Figure 4Small Round-Cell Neoplasm (A) Arising in the Adrenal Gland of a One-Year-Old Boy (Patient 60) and the Deletion of Chromosome 1p (Short Arrow) with Numerous Double Minute Chromosomes, Supporting a Diagnosis of Poor-Prognosis Neuroblastoma (B).), and the translocation (2; 13) of alveolar rhabdomyosarcoma (three tumors).

Clinically Important Cytogenetic Findings

Fifteen tumors (24 percent) contained cytogenetic aberrations that were helpful in establishing the final histopathological diagnosis (those from patients with numbers in boldface in Tables 1 and 2). These diagnostically important cytogenetic rearrangements were more frequent among the tumors from the children than among those from the adults (56 vs. 13 percent [9 of 16 vs. 6 of 46], P<0.05 by chi-square test). Nine tumors with diagnostically important rearrangements were small round-cell tumors with the translocation (11;22), the translocation (2; 13), or the deletion of chromosome 1p with double minute chromosomes (Ewing's sarcoma—primitive neuroectodermal tumor, four tumors; alveolar rhabdomyosarcoma, three tumors; and poor-prognosis neuroblastoma, two tumors, respectively). One of these tumors was that of Patient 12, a two-year-old boy with a facial neoplasm originally diagnosed as a primitive neuroectodermal tumor: reexcision of this tumor revealed occasional rhabdomyoblastic cells, and concomitant cytogenetic analysis demonstrated the translocation (2; 13) characteristic of alveolar rhabdomyosarcoma. Another karyotype diagnostic of a small round-cell tumor was that of the tumor of Patient 36, a 13-year-old girl with a pleural effusion containing clusters of atypical small round cells: all cells contained the translocation (11;22), which characterizes Ewing's sarcomas and primitive neuroectodermal tumors. The cells also contained a specific translocation involving chromosomes 1 and 16 that is seen in approximately 20 percent of Ewing's sarcomas22 but appears to be uncommon in primitive neuroectodermal tumors. Diagnostic cytogenetic findings in tumors other than small round-cell tumors included the results for Patient 2, with a poorly differentiated sarcoma with the translocation (X;18) of synovial sarcoma; Patient 9, with a previously reported pelvic smooth-muscle tumor in which complex and hyperdiploid cytogenetic changes supported a diagnosis of metastatic uterine leiomyosarcoma23; Patient 42, with a sarcoma that had histologic features suggestive of hemangiopericytoma but keratin immunoreactivity and the translocation (X;18), which characterize synovial sarcoma; and Patient 52, with a pleural effusion containing atypical mesothelial cells in which multiple cytogenetic aberrations supported a diagnosis of mesothelioma. The tumor of Patient 19 was particularly distinctive in that four schwannomas that appeared to be benign — all arising in the left leg —were found to have an identical chromosome 22 rearrangement. The shared, specific chromosome rearrangement indicated that the tumors were metastases rather than multicentric benign lesions. On the basis of the cytogenetic evidence of metastatic behavior, we classified this novel tumor as a malignant schwannoma. In keeping with precedent established for uterine smooth-muscle tumors, according to which metastatic lesions that appear to be benign are designated as metastasizing leiomyomas,24 this tumor might also have been categorized as a metastasizing benign schwannoma.

Cytogenetically Normal Tumors

Short-term cultures of six tumors yielded metaphases that lacked consistent cytogenetic aberrations (Table 3Table 3Clinical Data on Seven Patients with Malignant Soft-Tissue Tumors in Which Clonal Cytogenetic Aberrations Were Not Demonstrated.). Direct harvesting had not been carried out for any of these tumors. In three tumors — an atypical Ewing's sarcoma, an angiosarcoma, and an alveolar soft-part sarcoma — it was obvious from observing the tissue cultures that the tumors had failed to grow and that the normal metaphases derived from fibroblastic overgrowth. The cultures of the remaining cytogenetically normal tumors — a leiomyosarcoma and two rhabdomyosarcomas — also appeared to be fibroblastic. Because myogenic tumors sometimes resemble fibroblasts in culture, these three cultures were studied by electron microscopy and by immunohistochemical staining for desmin. There was no ultrastructural or immunohistochemical evidence of myogenic differentiation in the cultured cells, whereas immunohistochemical staining of the original tumor sections showed reactivity for desmin. When cultures from one rhabdomyosarcoma were also injected into nude mice, no tumorigenesis occurred during a 10-week observation period. All these findings supported a fibroblastic (stromal) origin of the normal metaphases.

Direct Cytogenetic Harvesting

Our demonstration of exclusively stromal outgrowth in short-term cultures of specimens of 6 tumors prompted the initiation of direct harvesting from the last 32 tumors in this series. The karyotype of each tumor was also determined from short-term cultures. Implementation of the direct approach seemed particularly promising because three of the unsuccessful short-term cultures had been those of tumors with high mitotic indexes (>1 mitosis per high-power field), suggesting that tumor metaphases would have been obtained if direct harvesting had been carried out. Sufficient material for direct harvesting was available in 20 of the last 32 tumors, and 13 of the 20 attempts (65 percent) yielded tumor metaphases. Three of the successful direct harvests (15 percent) involved tumors that subsequently failed to grow in short-term culture (the tumors of Patients 33, 44, and 56). Accordingly, cells obtained by direct harvesting were the only source of metaphases for these three tumors.

Needle Biopsies

Tumor material was obtained by fine-needle biopsy in Patients 5 and 58. Each of these specimens was found to have clonal chromosome aberrations in short-term culture,* and in both cases the clonal aberrations were diagnostically important (Table 2). These studies demonstrate that cytogenetic analysis of solid tumors can be carried out successfully with small tumor specimens (<2 mm3), provided that the specimens contain viable tumor cells.

Discussion

In this study, we have demonstrated the feasibility of routine chromosome analyses of a consecutive heterogeneous series of malignant soft-tissue tumors. The analyses were carried out in cells obtained by direct harvesting and from short-term culture, permitting a turnaround time (two to seven days) comparable to that achieved with immunohistochemical examination and electron microscopy. Clonal cytogenetic aberrations were detected in all successfully cultured tumors, and the cytogenetic aberrations often had clinical relevance. Our findings suggest that karyotypic analysis of malignant soft-tissue tumors may have a clinical usefulness equal to that of analysis of hematologic neoplasms.25 26 27 28

Four steps seemed crucial to the successful identification of cytogenetic aberrations in this series: ( 1 ) the rapid processing of specimens, which was necessary for the maintenance of tumor-cell viability; (2) the use of several mixtures of growth factors, including bovine pituitary extract and serum supplement, to maximize short-term tumor growth; (3) the daily observation of all tumor cultures so that metaphases could be harvested before extensive overgrowth by non-neoplastic stromal cells; and (4) the implementation of direct metaphase harvests, which often produced metaphases of good quality from high-grade tumors. Using these approaches, one can detect clonal chromosome rearrangements in virtually all malignant soft-tissue tumors, even when the tumor specimens are obtained by needle biopsy.

Although not observed in this study, true normal karyotypes have been described previously in at least five malignant soft-tissue tumors.29 , 30 Accordingly, a normal karyotype does not unequivocally exclude malignancy in this context. However, certain soft-tissue tumors — e.g., malignant fibrous histiocytomas and malignant peripheral-nerve—sheath tumors — characteristically contain very complex cytogenetic aberrations; the detection of an apparently normal karyotype in such tumors usually indicates overgrowth of the tumor component by non-neoplastic stromal cells.

Some malignant soft-tissue tumors appear to lack distinctive phenotypic features when examined by conventional light microscopy, but may contain diverse and diagnostically useful cellular constituents when studied by immunohistochemical techniques and electron microscopy.31 Unfortunately, tumor progression is sometimes accompanied by a loss of original distinguishing characteristics; accordingly, soft-tissue tumors that appear most undifferentiated on light microscopy may also lack diagnostic immunohistochemical and ultrastructural features. Because most diagnostic chromosome translocations — e.g., the translocation (X;18) of synovial sarcoma — are presumed to reflect oncogenic activations that are crucial to maintaining the transformed state, it is likely that these specific translocations are retained during the process of tumor dedifferentiation. In the present series, we observed diagnostic chromosome translocations in several histologically undifferentiated tumors.

Cytogenetic analyses of soft-tissue tumors have particular clinical relevance when applied to small round-cell tumors of children. The small round-cell tumors are composed of primitive cells that often lack distinguishing features, and the differential diagnosis can be extensive.32 In a typical case, it might include Ewing's sarcoma, peripheral primitive neuroectodermal tumor, rhabdomyosarcoma, neuroblastoma, and non-Hodgkin's lymphoma. On the basis of our findings and those of previous studies,33 it is clear that many small round-cell tumors have specific chromosome rearrangements that can be useful in establishing the diagnosis.

In conclusion, we recommend that karyotypic analysis be considered in the routine diagnostic evaluation of all small round-cell tumors. Although cytogenetic analyses may be diagnostic in certain non—small-cell soft-tissue tumors — e.g., synovial sarcoma and malignant mesothelioma — the clinical role of such analyses in evaluating other non—small-cell tumors, including leiomyosarcoma and malignant peripheral-nerve—sheath tumor, remains to be defined. Further delineation of the relevance of cytogenetic aberrations in the latter groups will require correlation of additional chromosome analyses with the results of light microscopy, electron microscopy, and immunohistochemical phenotyping. At present, however, cytogenetic analyses should be considered in cases of non—small-cell tumors in which immunohistochemical examination and electron microscopy have failed to establish a definitive diagnosis in a specimen obtained by biopsy or excision.

Supported in part by a grant from the Hood Foundation and by Physician-Scientist Awards (NIA-AG-00294 and 1 -K11 -CA-01498–01 ) to Dr. Fletcher from the National Institutes of Health.

We are indebted to Ms. Kim Lipinski Barron, Ms. Karen Pavelka, and Mr. Kevin Donovan for technical assistance with some of the cytogenetic assays; to Drs. Robert Shamberger, Trevor McGill, David Sugarbaker, and Robert Osteen for assistance in obtaining tumor specimens; and to the house officers and staff in the Departments of Pathology at Brigham and Women's Hospital and Children's Hospital and the Department of Pediatric Oncology, Dana–Farber Cancer Institute, whose contributions made these investigations possible.

Source Information

From the Departments of Pathology, Brigham and Women's Hospital (J.A.F., J.M.L., N.W., G.S.P., C.C.M., J.M.C.) and Children's Hospital (H.P.K.); the Department of Pediatric Oncology, Dana–Farber Cancer Institute, and the Division of Hematology—Oncology, Children's Hospital (J.A.F.); the Department of Radiology, Children's Hospital (F.A.H.); the Division of Hematology—Oncology, Massachusetts General Hospital (R.T.); and the Departments of Pathology, Pediatrics, Radiology, and Medicine, Harvard Medical School; all in Boston. Address reprint requests to Dr. Fletcher at the Department of Pathology, Brigham and Women's Hospital, 75 Francis St., Boston, MA 02115.

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  2. *

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